Publications

Publications by Marino Arroyo

2023

The laminin–keratin link shields the nucleus from mechanical deformation and signalling
Kechagia, Z.; Sáez, P.; Gómez-González, M.; Canales, B.; Viswanadha, S.; Zamarbide, M.; Andreu, I.; Koorman, T.; Beedle, A.E.M.; Elosegui-Artola, A.; Derksen, P.W.B.; Trepat, X.; Arroyo M.; Roca-Cusachs P.
Nature Materials, Vol. , Article number: , 2023

2022

Binding of anisotropic curvature-inducing proteins onto membrane tubes
Noguchi, H.; Tozzi, C. and Arroyo M.
Soft Matter, Vol. , Article number: , 2022

2021

Dynamic mechanochemical feedback between curved membranes and BAR protein self-organization
Le Roux, A.L.; Tozzi, C.; Walani, N.; Quiroga, X.; Zalvidea, D.; Trepat, X.; Staykova, M.; Arroyo, M.; Roca-Cusachs, P.
Nature Communications, Vol. 12, Article number: 6550, 2021

Mechanical compartmentalization of the intestinal organoid enables crypt folding and collective cell migration
Pérez-González, C.; Ceada, G.; Greco, F.; Matejčić, M.; Gómez-González, M.; Castro, N.; Menendez, A.; Kale, S.; Krndija, D.; Clark, A.G.; Gannavarapu, V.R.; Álvarez-Varela, A.; Roca-Cusachs, P.; Batlle, E.; Matic Vignjevic, D.; Arroyo, M.; Trepat, X.
Nature Cell Biology, Vol. 23, pp. 745-757, 2021

A theory of ordering of elongated and curved proteins on membranes driven by density and curvature
Tozzi, C.; Walani, N.; Le Roux, A.L.; Roca-Cusachs, P.; Arroyo, M.
Soft Matter, Vol. 17, pp. 3367-3379, 2021

2020

Spontaneous polarization and locomotion of an active particle with surface-mobile enzymes
De Corato, M., Pagonabarraga, I., Abdelmohsen, L.K.E.A., Sánchez, S., Arroyo, M
Physical Review Fluids, Vol. 5, Article number: 122001, 2020

A physical mechanism of tango1-mediated bulky cargo export
Raote, I.; Chabanon, M.; Walani, N.; Arroyo, M; Garcia-Parajo, M.F.; Malhotra, V. and Campelo, F
eLife, Vol. 9, pp. 1-41, 2020

Mechanics of axisymmetric sheets of interlocking and slidable rods
Riccobelli, D.; Noselli, G.; Arroyo, M.; DeSimoned, A.
Journal of the Mechanics and Physics of Solids, Vol. 141, Article number: 103969, 2020

High-order maximum-entropy collocation methods
Greco, F.; Arroyo, M.
Computer Methods in Applied Mechanics and Engineering, Vol. 367, Article number: 113115, 2020

Measuring mechanical stress in living tissues
Gómez-González, M.; Latorre, E.; Arroyo, M. and Trepat, X.
Nature Reviews Physics, Vol. 2, pp. 300-317, 2020

Phase field modeling of brittle fracture in an Euler–Bernoulli beam accounting for transverse part-through cracks
Lai, W.; Gao, J.; Li, Y.; Arroyo, M.; Shen, Y.
Computer Methods in Applied Mechanics and Engineering, Vol. 361, Article number: 112787, 2020

Approximation of tensor fields on surfaces of arbitrary topology based on local Monge parametrizations
Torres-Sánchez, A.; Santos-Olivan, D.; Arroyo, M.
Journal of Computational Physics, Vol. 405, Article number: 109168, 2020

Self-Propulsion of Active Colloids via Ion Release: Theory and Experiments
De Corato, M.; Arqué, X.; Patiño, T.; Arroyo, M.; Sánchez, S.; Pagonabarraga, I.
Physical Review Letters, Vol. 124, Article number: 108001, 2020

The 2020 motile active matter roadmap
Gompper, G., Winkler, R.G., Speck, T., …Arroyo, M., Kale, S
Journal of Physics: Condensed Matter, Vol. 32, Article number: 193001, 2020

2019

Surface Tension Controls the Hydraulic Fracture of Adhesive Interfaces Bridged by Molecular Bonds
Kaurin, D.; Arroyo, M.
Physical Review Letters, Vol. 123, Article number: 228102, 2019

Morphable structures from unicellular organisms with active, shape-shifting envelopes: Variations on a theme by Gauss
Cicconofri, G., Arroyo, M., Noselli, G., DeSimone, A.
International Journal of Non-Linear Mechanics, Vol. 118, Article number: 103278, 2019

Out-of-equilibrium mechanochemistry and self-organization of fluid membranes interacting with curved proteins
Tozzi, C., Walani, N., Arroyo, M
New Journal of Physics, Vol. 21, Article number: 93004, 2019

Embryonic self-fracking
Arroyo, M.; Trepat, X.
Science, Vol. 365, pp. 442-443, 2019

The plasma membrane as a mechanochemical transducer
Le Roux, A.-L., Quiroga, X., Walani, N., Arroyo, M., Roca-Cusachs, P
Philosophical Transactions of the Royal Society B, Vol. 374, Article number: 20180221, 2019

Modelling fluid deformable surfaces with an emphasis on biological interfaces
Torres-Sánchez, A.; Millán, D.; Arroyo, M.
Journal of Fluid Mechanics, Vol. 872, pp. 218-271, 2019

Combined molecular/continuum modeling reveals the role of friction during fast unfolding of coiled-coil pro- teins
Torres-Sánchez, A.; Vanegas, J. M.; Purohit, P. K.; Arroyo, M.
Soft Matter, Vol. , Article number: , 2019

Swimming Euglena respond to confinement with a behavioural change enabling effective crawling
Noselli, G.; Beran, A.; Arroyo, M; DeSimone, A.
Nature Physics, Vol. , Article number: , 2019

Smart helical structures inspired by the pellicle of euglenids
Noselli, G.; Arroyo, M; DeSimone, A.
Journal of the Mechanics and Physics of Solids, Vol. 123, pp. 234-246, 2019

2018

Active superelasticity in three-dimensional epithelia of controlled shape
Latorre, E.; Kale, S.; Casares, L.; Gómez-González, M.; Uroz, M.; Valon, L.; Nair, R.V.; Garreta, E.; Montserrat, N.; del Campo, A.; Ladoux, B.; Arroyo, M.; Trepat, X.
Nature, Vol. 563, pp. 203-208, 2018

A variational model of fracture for tearing brittle thin sheets
Li, B.; Millán, D.; Torres-Sánchez, A.; Roman, B. and Arroyo, M.
Journal of the Mechanics and Physics of Solids, Vol. 119, pp. 334-348, 2018

Onsager’s Variational Principle in Soft Matter: Introduction and Application to the Dynamics of Adsorption of Proteins onto Fluid Membranes
M. Arroyo, N. Walani, A. Torres-Sánchez and D. Kaurin
The role of mechanics in the study of lipid bilayers, Vol. 1, pp. 287-332, 2018

2017

Meshfree Methods
Huerta, A., Belytschko, T., Fernández-Méndez, S., Rabczuk, T., Zhuang, X., and Arroyo, M.
Encyclopedia of Computational Mechanics Second Edition, Vol. 2 Fundamentals, Chapter 3, pp. 1-38, 2017

Hydraulic fracturing in cells and tissues: fracking meets cell biology
Arroyo, M. and Trepat, X.
Current Opinion in Cell Biology, Vol. 44, pp. 1-6, 2017

2016

Shape Transformations of Lipid Bilayers Following Rapid Cholesterol Uptake
Mohammad Rahimi, David Regan, Marino Arroyo, Anand Bala Subramaniam, Howard A. Stone and Margarita Staykova
Biophysical Journal, Vol. 111, pp. 2651-2657, 2016

Fourth order phase-field model for local max-ent approximants applied to crack propagation
Amiri, F.; Millán, D.; Arroyo, M.; Silani, M.; Rabczuk, T.
Computer Methods in Applied Mechanics and Engineering, Vol. 312, pp. 254-275, 2016

Coexistence of wrinkles and blisters in supported graphene
Zhang, K. and Arroyo, M.
Extreme Mechanics Letters, Vol. 14, pp. 23-30, 2016

Charting molecular free-energy landscapes with an atlas of collective variables
Hashemian, B.; Millán, D and Arroyo, M.
The Journal of Chemical Physics, Vol. 145, Article number: 174109, 2016

Geometric derivation of the microscopic stress: A covariant central force decomposition
Torres-Sánchez, A.; Vanegas, J. M.; and Arroyo, M.
Journal of the Mechanics and Physics of Solids, Vol. 96, pp. 224-239, 2016

Sticking and sliding of lipid bilayers on deformable substrates
Stubbington, L.; Arroyo, M.; Staykova, M.
Soft Matter, Vol. , Article number: , 2016

2015

Hydraulic fracture and toughening of a brittle layer bonded to a hydrogel
Lucantonio, A.; Noselli, G.; Trepat, X.; DeSimone, A.; Arroyo, M.
Physical Review Letters, Vol. 115, Article number: 188105, 2015

Fracture toughening and toughness asymmetry induced by flexoelectricity
Abdollahi, A.; Peco, C.; Millán, D.; Arroyo, M.; Catalan, G.; Arias, I.
Physical Review B, Vol. 92, Article number: 94101, 2015

Examining the mechanical equilibrium of microscopic stresses in molecular simulations
Torres-Sánchez, A.; Vanegas, J. M.; Arroyo, M.
Physical Review Letters, Vol. 114, Article number: 258102, 2015

Physical principles of membrane remodelling during cell mechanoadaptation
Kosmalska, A.J.; Casares, L.; Elosegui-Artola, A.; Thottacherry, J.J.; Moreno-Vicente, R.; del Pozo, M.A.; Mayor, S.; Arroyo, M.; Navajas, D.; Trepat, X.; Gauthier, N.C.; Roca-Cusachs, P.
Nature Communications, Vol. 6, Article number: 7292, 2015

Phase-field modeling and simulation of fracture in brittle materials with strongly anisotropic surface energy
Li, B.; Peco, C.; Millán, D.; Arias, I. and Arroyo, M.
International Journal for Numerical Methods in Engineering, Vol. 102 (3-4), pp. 711-727, 2015

Efficient implementation of Galerkin meshfree methods for large-scale problems with an emphasis on maximum entropy approximants
Peco, C.; Millán, D.; Rosolen, A.; Arroyo, M.
Computers and Structures, Vol. 150, pp. 52-62, 2015

Revisiting pyramid compression to quantify flexoelectricity: A three-dimensional simulation study
Abdollahi, A. ; Millán, D. ; Peco, C. ; Arroyo, M.; Arias, I.
Physical Review B, Vol. 91, Article number: 104103, 2015

Hydraulic fracture during epithelial stretching
Casares, L. ; Vincent, R. ; Zalvidea, D. ; Campillo, N.; Navajas, D. ; Arroyo, M. ; Trepat, X.
Nature Materials, Vol. 14, pp. 343-351, 2015

Cell-based maximum entropy approximants
Millán, D. ; Sukumar N. ; and Arroyo, M.
Computer Methods in Applied Mechanics and Engineering, Vol. 284, pp. 712-731, 2015

Topological obstructions in the way of data-driven collective variables
Hashemian, B. ; and Arroyo, M.
The Journal of Chemical Physics, Vol. 142, Article number: 44102, 2015

Computing the volume enclosed by a periodic surface and its variation to model a follower pressure
Rahimi, M.; Zhang, K.; Arroyo, M.
Computational Mechanics, Vol. 55 (3), pp. 519-525, 2015

2014

Understanding and strain-engineering wrinkle networks in supported graphene through simulations
Zhang, K. and Arroyo, M.
Journal of the Mechanics and Physics of Solids, Vol. 72, pp. 61-74, 2014

Force Transduction and Lipid Binding in MscL: A Continuum-molecular Approach
Vanegas, J. M. ; and Arroyo, M.
Plos ONE, Vol. 9 (12), Article number: , 2014

Computational evaluation of the flexoelectric effect in dielectric solids
Abdollahi, A.; Peco, C.; Millán, D.; Arroyo M.; and Arias I.
Journal of Applied Physics, Vol. 116, Issue 9, Article number: 93502, 2014

Interplay of packing and flip-flop in local bilayer deformation. How phosphatidylglycerol could rescue mitochondrial function in a cardiolipin- deficient yeast mutant
Khalifat, N; Rahimi, M.; Bitbol, A-F; Seigneuret, M.; Fournier, J.-B.; Puff, N.; Arroyo, M.; and Angelova, M.
Biophysical Journal, Vol. 107, Issue 4, pp. 879-890, 2014

Phase-field modeling of fracture in linear thin shells
Amiri, F.; Millán, D.; Shen, Y.; Rabczuk, T.; and Arroyo, M.
Theoretical and Applied Fracture Mechanics, Vol. 69, pp. 102-109, 2014

Importance of force decomposition for local stress calculations in biomembrane molecular simulations
Vanegas, J.M.;Torres-Sánchez, A.; and Arroyo, M.
Journal of Chemical Theory and Computation, Vol. 10, pp. 691-702, 2014

Nonsingular Isogeometric Boundary Element Method for Stokes Flows in 3D
Heltai, L.; Arroyo, M. and DeSimone, A.
Computer Methods in Applied Mechanics and Engineering, Vol. 268, pp. 514-539, 2014

Shape control of active surfaces inspired by the movement of euglenoids
Arroyo, M. and DeSimone, A.
Journal of the Mechanics and Physics of Solids, Vol. 62, pp. 99-112, 2014

XLME interpolants, a seamless bridge between XFEM and enriched meshless methods
Amiri, F.; Anitescu, C.; Arroyo, M.; Bordas, S.P.A.; and Rabczuk, T.
Computational Mechanics, Vol. 53, Issue 1, pp. 45-57, 2014

2013

Modeling and enhanced sampling of molecular systems with smooth and nonlinear data-driven collective variables
Hashemian, B, Millán, D. and Arroyo, M.
The Journal of Chemical Physics, Vol. 139, Number 21, Article number: 214101, 2013

Curved fluid membranes behave laterally as an effective viscoelastic medium
Rahimi, M.; De Simone, A. and Arroyo, M.
Soft Matter, Vol. 9, pp. 11033-11045, 2013

An adaptive meshfree method for phase-field models of biomembranes. Part I: approximation with maximum-entropy approximants
A. Rosolen, C. Peco and M. Arroyo
Journal of Computational Physics, Vol. 249, pp. 303-319, 2013

An adaptive meshfree method for phase-field models of biomembranes. Part II: a Lagrangian approach for membranes in viscous fluids
C. Peco, A. Rosolen and M. Arroyo
Journal of Computational Physics, Vol. 249, pp. 320-336, 2013

Blending isogeometric analysis and local maximum entropy meshfree approximants
Rosolen, A. and Arroyo, M.
Computer Methods in Applied Mechanics and Engineering, Vol. 264, pp. 95-107, 2013

Adhesion and friction control localized folding in supported graphene
Zhang, K. and Arroyo, M.
Journal of Applied Physics, Vol. 113, pp. 1-8, 2013

Nonlinear manifold learning for model reduction in finite elastodynamics
Millán, D. and Arroyo, M.
Computer Methods in Applied Mechanics and Engineering, Vol. 261-262, pp. 118-131, 2013

Second order convex maximum entropy approximants with applications to high order PDE
Rosolen, A.; Millan, D. and Arroyo, M.
International Journal for Numerical Methods in Engineering, Vol. 94, Issue 2, pp. 150-182, 2013

Confined Bilayers Passively Regulate Shape and Stress
M. Staykova; M. Arroyo; M. Rahimi, and H. A. Stone
Physical Review Letters, Vol. 110, Article number: 28101, 2013

An atomistic-based foliation model for multilayer graphene materials and nanotubes
Ghosh, S. and Arroyo, M.
Journal of the Mechanics and Physics of Solids, Vol. 61, Iss. 1, pp. 235-253, 2013

Nonlinear manifold learning for meshfree finite deformation thin shell analysis
Millán, D; Rosolen, A and Arroyo, M.
International Journal for Numerical Methods in Engineering, Vol. 93, Issue 7, pp. 685-713, 2013

2012

Reverse engineering the euglenoid movement
Arroyo, M.; Heltai, L.; Millán, D. and DeSimone, A.
Proceedings of the National Academy of Science USA, Vol. 109, pp. 17874-17879, 2012

Shape dynamics, lipid hydrodynamics and the complex viscoelasticty of bilayer membranes
Rahimi, M. and Arroyo, M.
Physical Review E, Vol. 86, Num. 1, pp. 11932-11947, 2012

Thin-shell theory based analysis of radially pressurized multiwall carbon nanotubes
Shima, H.; Ghosh, S.; Arroyo, M.; Iiboshi, K. and Sato, M.
Computational Materials Science, Vol. 52, Issue 1, pp. 90-94, 2012

2011

Thin shell analysis from scattered points with maximum-entropy approximants
Millán, D; Rosolen, A and Arroyo, M.
International Journal for Numerical Methods in Engineering, Vol. 85, Iss. 6, pp. 723-751, 2011

2010

Diverse corrugation pattern in radially shrinking carbon nanotubes
Shima, H.; Sato, M.; Iiboshi K.; Ghosh S. and Arroyo M.
Physical Review B, Vol. 82, Issue 8, Article number: 85401, 2010

On the optimum support size in meshfree methods: a variational adaptivity approach with maximum entropy approximants
Rosolen, A,; Millán, D. and Arroyo, M.
International Journal for Numerical Methods in Engineering, Vol. 82, Issue 7, pp. 868-895, 2010

2009

Elastic bending modulus of monolayer graphene
Lu, Q; Arroyo, M and Huang, R
Journal of Physics D: Applied Physics, Vol. 42, Issue10, pp. 102002-102009, 2009

Smooth, second order, non-negative meshfree approximants selected by maximum entropy
C.J. Cyron, M. Arroyo, M. Ortiz
International Journal for Numerical Methods in Engineering, Vol. 79, pp. 1605-1632, 2009

Relaxation dynamics of fluid membranes
Arroyo, M. and DeSimone, A.
Physical Review E, Vol. 79, Issue 3, pp. 31914-31898, 2009

Effective coarse-grained simulations of super-thick multi-walled carbon nanotubes under torsion
Jian Zou, Xu Huang, Marino Arroyo, and Sulin Zhang
Journal of Applied Physics, Vol. 5, Issue 3, pp. 33516-9, 2009

2008

Optimization of a novel micro-opto-X-ray imaging lens
Ostadi, H., Arroyo, M., Prewett, P.D., Jiang, K.C. and Huq , S.E
Microelectronic Engineering, Vol. 85, Issues 5-6, pp. 1086-1088, 2008

Rippling and a phase-transforming mesoscopic model for multiwalled carbon nanotubes
Arroyo, M., Arias I.
Journal of the Mechanics and Physics of Solids, Vol. 56, Issue 4, pp. 1224-1244, 2008

Size dependent nonlinear elastic scaling of multiwalled carbon nanotubes
Arias I., Arroyo, M.
Physical Review Letters, Vol. 100, Issue 8, Article number: 85503, 2008

2007

On the geometric character of stress in continuum mechanics
Kanso E., Arroyo M., Tong Y., Yavari A., Marsden J.E. and Desbrun M
Zeitschrift für Angewandte Mathematik und Physik (ZAMP), Vol. 58, Issue 5, pp. 843-856, 2007

2006

Local maximum-entropy approximation schemes: a seamless bridge between finite elements and meshfree methods
Marino Arroyo and Michael Ortiz
International Journal for Numerical Methods in Engineering, Vol. 65, Issue 13, pp. 2167-2202, 2006

2005

Continuum mechanics modeling and simulation of carbon nanotubes
Marino Arroyo and Ted Belytschko
Meccanica, Vol. 40, Issues 4-6, pp. 455-469, 2005