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Publications by José Muñoz


Adjoint-based optimal control of contractile elastic bodies. Application to limbless locomotion on frictional substrates
Bijalwan, A.; Muñoz, J.J.
Computer Methods in Applied Mechanics and Engineering, Vol. 420, Article number: 116697, 2024

Fractional calculus as a generalized kinetic model for biochemical methane potential tests
Da Silva, C., Peces, M., Jaques, A., Muñoz, J.J., Dosta, J., Astals, S.
Bioresource Technology, Vol. , Article number: , 2024


Single and two-cells shape analysis from energy functionals for three-dimensional vertex models
Khan, A.K.; Muñoz-Castro, G.; Muñoz, J.J.
International Journal for Numerical Methods in Biomedical Engineering, Vol. 39, Article number: , 2023

A control Hamiltonian preserving discretisation for optimal control
Bijalwan, A.; Muñoz, J.J.
Multibody System Dynamics, Vol. 59, pp. 19-43, 2023


Local mechanical stimuli shape tissue growth in vertebrate joint morphogenesis
Comellas, E.; Farkas, J.E.; Kleinberg, G.; Lloyd, K.; Mueller, T.; Duerr, T.J.; Muñoz, J.J.; Monaghan, J.R.; Shefelbine, S.J.
Proceedings of the Royal Society B, Vol. 289, Article number: 20220621, 2022

Condensation of the Drosophila Nerve Cord is Oscillatory and depends on Coordinated Mechanical Interactions
Karkali, K.; Tiwari, P.; Singh, A.; Tlili, S.; Jorba, I.; Navajas, D.; Muñoz, J.J.; Saunders, T.E. and Martin-Blanco, E.
Developmental Cell, Vol. 57, pp. 867-882, 2022

On the net displacement of contact surface centroid in contractile bodies  
Muñoz, J.J., Condamin, L., Doste, D.
Mechanics Research Communications, Vol. 119, pp. 1-5, 2022


Stability bounds of a delay visco-elastic rheological model with substrate friction
Dawi, M.A., Muñoz, J.J.
Journal of Mathematical Biology, Vol. 83, pp. 1-19, 2021

Oncogenic RAS instructs morphological transformation of human epithelia via differential tissue mechanics
Nyga, A., Muñoz, J.J., Dercksen, S., Fornabaio, G., Uroz, M., Trepat, X., Baum, B., Matthews, H., Conte, V.
Science Advances, Vol. 7, Article number: 42, 2021

Effects of time delays and viscoelastic parameters in oscillatory response of cell monolayers
Borja, C., Moral, E., Muñoz, J.J.


Junctional and cytoplasmic contributions in wound healing
Mosaffa, P., Tetley R.J., Rodríguez-Ferran, A., Mao, Y., Muñoz, J.J.
Journal of the Royal Society Interface, Vol. 17, Article number: 20200264, 2020

Development of a new 3D hybrid model for epithelia morphogenesis
Ioannou, F., Dawi, M.A., Tetley, R.J., Mao, Y., Munoz, J.J.
Frontiers in Bioengineering and Biotechnology, Vol. 8, pp. 1-11, 2020


Planar differential growth rates initiate precise fold positions in complex epithelia
Tozluoglu, M.; Duda, M.; Kirkland, N.J.; Barrientos, R.; Burden,J.J.; Muñoz,J.J. and Y. Mao
Developmental Cell, Vol. 51, pp. 299-312, 2019

Stress relaxation in epithelial monolayers is controlled by the actomyosin cortex
Khalilgharib, N.; Fouchard, J.; Asadipour, N.; Barrientos, R.; Duda, M.; Bonfanti, A.; Yonis, A.; Harris, A. ; Mosaffa, P.; Fujita, Y., Kabla, A.; Mao, Y.; Baum, B.; Muñoz, JJ.;Miodownik, M.; Charras, G.
Nature Physics, Vol. 15, pp. 839-847, 2019

Computational modeling of epithelial wound healing: Short and long term chemo-mechanical mechanisms
Roldan, L.; Muñoz, J.J.; Saez, P.
Computer Methods in Applied Mechanics and Engineering, Vol. 350, pp. 28-56, 2019


Mechanical oscillations in biological tissues as a result of delayed rest-length changes
Muñoz, J.J.; Dingle, M.; Wenzel, M.
Physical Review E, Vol. 98, Article number: , 2018

Hybrid cell-centred/vertex model for multicellular systems with equilibrium-preserving remodelling
Mosaffa, P.; Rodríguez-Ferran, A.; Muñoz, J.J.
International Journal for Numerical Methods in Biomedical Engineering, Vol. 34, pp. 1-28, 2018

Computation of forces from deformed visco-elastic biological tissues
Munoz, J.J.; Amat, D.; Conte, V.
Inverse Problems, Vol. 34, Article number: 4, 2018


R-adaptivity in limit analysis
Muñoz, J.; Hambleton, J. and Sloan, S.
Advances in direct methods for materials and structures, Vol. , pp. 73-84, 2017

Font-Llagunes, J.M.; Muñoz, J.J.; Ambrósio, J.A.C.
Multibody System Dynamics, Vol. 39, pp. 1-2, 2017


Collective cell durotaxis emerges from long-range intercellular force transmission
Sunyer, R.; Conte V.; Escribano, J.; Elosegui-Artola, A.; Labernadie A.; Valon L.; Navajas D.; García-Aznar J. M.; Muñoz, J.J.; Roca-Cusachs P; Trepat, X.
Science, Vol. 353, pp. 1157-1161, 2016

Non-regularised Inverse Finite Element Analysis for 3D Traction Force Microscopy
Muñoz, J.J.
International Journal of Numerical Analysis and Modeling, Vol. 13, Issue 5, pp. 763-781, 2016

Porous-based rheological model for tissue fluidisation
Asadipour, N.; Trepat, X.; Munoz, J.J
Journal of the Mechanics and Physics of Solids, Vol. 96, pp. 535-549, 2016


Cell-centred model for the simulation of curved cellular monolayers
Mosaffa, P.; Asadipour, N.; Millán, D.; Rodríguez-Ferran, A.; Muñoz, J.J.
Computational Particle Mechanics, Vol. 2 (4), pp. 359-370, 2015

AAR-based decomposition method for lower bound limit analysis
Muñoz, J.J.; Rabiei, N.
Engineering and Computational Mechanics , Vol. 168 (4), pp. 169-177, 2015

AAR-based decomposition algorithm for non-linear convex optimisation
Rabiei, N.; Muñoz, J. J.
Computational Optimization and Applications, Vol. 62 (3), pp. 761-786, 2015

Control of cell-cell forces and collective cell dynamics by the intercellular adhesome
Bazellières, E.; Conte, V.; Elosegui-Artola, A.; Serra-Picamal, X.; Bintanel-Morcillo, M.; Roca-Cusachs, P.; Muñoz, J. J.; Sales-Pardo, M.; Guimerà, R.; Trepat X.
Nature Cell Biology, Vol. 17, pp. 409-420, 2015

Mapping forces and kinematics during collective cell migration
Serra-Picamal, X.; Conte, V.; Sunyer, R.; Muñoz, J.J.; Trepat, X.
Methods in Cell Biology, Vol. 125, pp. 309-330, 2015


Forces driving epithelial wound healing
Brugués, A.; Anon, E.; Conte, V.; Veldhuis, J.H.; Gupta, M.; Colombelli, J.; Muñoz, J.J.; Brodland, G.W.; Ladoux, B.; and Trepat, X.
Nature Physics, Vol. 10, Issue 9, pp. 683-690, 2014


Physiology-based model of cell viscoelasticity
Muñoz, J.J. and Albo, S.
Physical Review E, Vol. 88, Issue 1, pp. 1-8, 2013

Diffusion-reaction model for Drosophila embryo development
Allena, R.; Muñoz, J. J. and Aubry, D.
Computer Methods in Biomechanics and Biomedical Engineering, Vol. 16, Number 3, pp. 356-374, 2013

Stability of anchored sheet wall in cohesive-frictional soils by FE limit analysis
Muñoz, J. J.; Lyamin, A. and Huerta, A.
International Journal for Numerical and Analytical Methods in Geomechanics, Vol. 37, Number 9, pp. 1213-1230, 2013

A truss element for modelling reversible softening in living tissues
Muñoz, J.J.; Conte, V.; Asadipour, N.; and Miodownik, M.
Mechanics Research Communications, Vol. 49, pp. 44-49, 2013

Modelling of mixed damage on fibre reinforced composite laminates subjected to low velocity impact
Curiel, J.L., Phaneendra, S. and Muñoz, J.J.
International Journal of Damage Mechanics, Vol. 22, Number 3, pp. 356-374, 2013


A note on upper bound formulations in limit analysis
Muñoz, J. J.; Huerta, A.; Bonet, J. and J. Peraire
International Journal for Numerical Methods in Engineering, Vol. 91, Iss. 8, pp. 896-908, 2012

A biomechanical analysis of ventral furrow formation in the Drosophila melanogaster embryo
Conte, V.; Ulrich, F. ;Baum, B.; Muñoz, J.; Veldhuis, J.; Brodland, W. and Miodownik, M.
Plos ONE, Vol. 7, Num. 4, pp. 1-17, 2012


Stress-dependent morphogenesis: continuum mechanics and truss systems
Muñoz, J; Conte, V and Miodownik, M
Biomechanics and Modeling in Mechanobiology, Vol. 9, Issue 4, pp. 451-467, 2010


Robust mechanisms of ventral furrow invagination require the combination of cellular shape changes
Conte, V.; Muñoz, J.; Baum, B. and Miodownik M.
Physical Biology, Vol. 6, Issue 1, pp. 16010-16021, 2009

Upper and lower bounds in limit analysis: adaptive meshing strategies and discontinuous loading
Muñoz, J.J., Bonet, J., Huerta, A., Peraire, J.
International Journal for Numerical Methods in Engineering, Vol. 77, Issue 4, pp. 471-501, 2009


On the modelling of incompressibility in linear and non-linear elasticity with the master-slave approach
Muñoz, J.J.
International Journal for Numerical Methods in Engineering, Vol. 74, Issue 2, pp. 269-293, 2008

A 3D finite element model of ventral furrow invagination in the Drosophila melanogaster embryo
Vito, C., Muñoz, J.J., Miodownik M.
Journal of the Mechanical Behavior of Biomedical Materials, Vol. 1, Issue 2, pp. 188-198, 2008

Modelling unilateral frictionless contact using the null-space method and cubic B-Spline interpolation
Muñoz, J.J.
Computer Methods in Applied Mechanics and Engineering, Vol. 197, Issues 9-12, pp. 979-993, 2008


A deformation gradient decomposition method for the analysis of the mechanics of morphogenesis
Muñoz, J.J., Barrett, K., Miodownik M.
Journal of Biomechanics, Vol. 40, Issue 6, pp. 1372-1380, 2007


Sliding joints in 3D beams: Conserving algorithms using the master-slave approach
Muñoz, J and Jelenic
Multibody System Dynamics, Vol. 16, Issue 3, pp. 237-261, 2006

On the numerical simulation of fatigue driven delamination with interface elements
Muñoz, J; Galvanetto, U and Robinson, P
International Journal of Fatigue, Vol. 28, Issue 10, pp. 1136-1146, 2006


Sliding contact conditions using the master-slave approach with application on geometrically non-linear beams
Muñoz, J and Jelenic, G
International Journal of Solids and Structures, Vol. 41, Issues 24–25, pp. 6963-6992, 2004


Master-slave approach for the modelling of joints with dependent degrees of freedom in flexible mechanisms
Muñoz, J; Jelenic, G and Crisfield, MA
Communications in Numerical Methods in Engineering, Vol. 19, Issue 9, pp. 689-702, 2003